Python Script to Modify Text File -- 2

Write a script that will execute the modifications to a pdb file (a specific text file format) in order to execute the molecular docking program lightdock

1. Download and install Lightdock ([login to view URL])

2. Test Lightdock for Protein-DNA binding using tutorial ([login to view URL])

3. Write python script that will:

a. Execute the reduce function for “trim” and “build” of the hydrogen in the protein and DNA molecule pdb file ([login to view URL])

b. Execute the pdb_atom_renumber on the protein pdb ([login to view URL])

c. Execute the reduce to amber script on the DNA pdb ([login to view URL] under 3.2 DNA Section)

d. Ensure DNA pdb atoms are compliant with [login to view URL] ([login to view URL])

e. Ensure the column spacing of the DNA pdb atoms are compliant ([login to view URL])

4. Test script on protein and DNA pdb provided when job is accepted and run in lightdock for ensure functionality

Навыки: Python, Биотехнологии, Биология, Biomedical Engineering

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ID проекта: #33972782

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I have dealt with PDB file manipulations for a decade. All the scripts/programs listed can be listed can be combined into a single executable. The example you have provided doesn't contain a DNA, FYI. You don't need Больше

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